SNP Profiles of PA 121 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CT	CC	GG	TT	AA	AC	CC	GG	GG	AA	TT	AA
1._RUQ_1059	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
2._PA_121_[PER]	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
3._PA_121_[PER]	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
4._PA_121_[PER]	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
5._RUQ_1059	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
6._PA_121_[PER]	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
7._PA_121_[PER]	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
8._PA_121_[PER]	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
9._GC-05-011-1-11	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
10._GC-05-011-1-11	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
11._GC-05-011-1-11	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
12._PA_121_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
13._RUQ_1059	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
14._PA_121_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
15._GC-05-011-1-11	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
16._RUQ_1059	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
17._GC-05-011-1-11	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CT	AA	CC	AA	AG	CG	AA	CC	TT	CC	GG	CC
1._RUQ_1059	GG	_	_	_	_	AA	_	CG	_	CC	TT	_	_	_
2._PA_121_[PER]	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
3._PA_121_[PER]	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
4._PA_121_[PER]	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
5._RUQ_1059	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
6._PA_121_[PER]	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
7._PA_121_[PER]	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
8._PA_121_[PER]	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
9._GC-05-011-1-11	GG	_	_	_	_	AA	_	CG	_	CC	TT	_	_	_
10._GC-05-011-1-11	GG	_	_	_	_	AA	_	CG	_	CC	TT	_	_	_
11._GC-05-011-1-11	GG	_	_	_	_	AA	_	CG	_	CC	TT	_	_	_
12._PA_121_[PER]	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
13._RUQ_1059	_	_	_	_	_	_	_	CG	_	CC	TT	_	_	_
14._PA_121_[PER]	_	_	_	_	_	CC	_	GG	_	CC	_	_	_	_
15._GC-05-011-1-11	GG	_	_	_	_	CC	_	CC	_	CC	TT	_	_	_
16._RUQ_1059	GG	_	_	_	_	AA	_	CG	_	CC	AA	_	_	_
17._GC-05-011-1-11	GG	_	_	_	_	CC	_	GG	_	CC	CT	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CC	CC	GG	AG	CT	TT	AA	AA	TT	GG	GG	AG	CC
1._RUQ_1059	_	_	CC	GG	AG	_	_	AA	_	_	GG	-	AG	CC
2._PA_121_[PER]	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
3._PA_121_[PER]	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
4._PA_121_[PER]	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
5._RUQ_1059	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
6._PA_121_[PER]	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
7._PA_121_[PER]	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
8._PA_121_[PER]	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
9._GC-05-011-1-11	AA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	AG	CC
10._GC-05-011-1-11	AA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	AG	CC
11._GC-05-011-1-11	AA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	AG	CC
12._PA_121_[PER]	AA	_	_	GG	_	_	_	_	_	_	GG	_	AG	_
13._RUQ_1059	_	_	_	_	_	_	_	_	_	_	CC	_	_	_
14._PA_121_[PER]	AA	_	_	GT	_	_	_	_	_	_	GG	_	AG	_
15._GC-05-011-1-11	AA	_	CC	GG	AG	_	_	AA	_	CG	GG	AA	AG	TT
16._RUQ_1059	_	_	_	CC	AG	_	_	AA	_	CG	CC	GG	AG	_
17._GC-05-011-1-11	AA	_	TT	GT	AG	_	_	CC	_	CG	GG	AG	AG	CT

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	CC	GG	CT	CC	GG	AA	TT	GG	TT	GG	GG	GG
1._RUQ_1059	_	_	_	_	_	_	_	_	TT	_	_	_	_	GG
2._PA_121_[PER]	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
3._PA_121_[PER]	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
4._PA_121_[PER]	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
5._RUQ_1059	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
6._PA_121_[PER]	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
7._PA_121_[PER]	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
8._PA_121_[PER]	_	_	_	GG	_	_	_	_	TT	_	_	_	_	GG
9._GC-05-011-1-11	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
10._GC-05-011-1-11	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
11._GC-05-011-1-11	_	_	_	GG	_	CC	_	_	TT	_	_	_	_	GG
12._PA_121_[PER]	_	_	_	AG	_	CT	_	_	TT	_	_	_	_	CG
13._RUQ_1059	_	_	_	_	_	_	_	_	_	_	_	_	_	CC
14._PA_121_[PER]	_	_	_	AG	_	CC	_	_	GT	_	_	_	_	CG
15._GC-05-011-1-11	_	_	_	AG	_	CT	_	_	TT	_	_	_	_	CG
16._RUQ_1059	_	_	_	GG	_	_	_	_	AA	_	_	_	_	CC
17._GC-05-011-1-11	_	_	_	AG	_	CC	_	_	GT	_	_	_	_	CG

	57	58
_Input profile	CT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1059	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_1059	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-05-011-1-11	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-011-1-11	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-011-1-11	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_1059	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._PA_121_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-011-1-11	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_1059	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-011-1-11	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_121_[PER] RUQ_1059

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._PA_121_[PER] RUQ_1059

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_121_[PER]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

3._PA_121_[PER]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

4._PA_121_[PER]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

5._PA_121_[PER] RUQ_1059

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._PA_121_[PER]

identical
13 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

7._PA_121_[PER]

identical
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

8._PA_121_[PER]

identical
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

9._PA_121_[PER] GC-05-011-1-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

10._PA_121_[PER] GC-05-011-1-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._PA_121_[PER] GC-05-011-1-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._PA_121_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._PA_121_[PER] RUQ_1059

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

14._PA_121_[PER]

69.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._PA_121_[PER] GC-05-011-1-11

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._PA_121_[PER] RUQ_1059

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

17._PA_121_[PER] GC-05-011-1-11

59.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP998	42	TcSNP999	43	TcSNP1010	44	TcSNP1019	45	TcSNP1053
46	TcSNP1062	47	TcSNP1112	48	TcSNP1144	49	TcSNP1205	50	TcSNP1230
51	TcSNP1253	52	TcSNP1275	53	TcSNP1293	54	TcSNP1401	55	TcSNP1404
56	TcSNP1458	57	TcSNP1524	58	TcSNP1527